# Claude Code 101 for Academic Researchers
**作者**: Mushtaq Bilal, PhD
**日期**: 2026-05-07T10:43:55.000Z
**来源**: [https://x.com/MushtaqBilalPhD/status/2052338632426467550](https://x.com/MushtaqBilalPhD/status/2052338632426467550)
---

This is a five-part tutorial to help academic researchers get started on Claude Code.
I have written it an accessible language and you don't need any technical background to understand this tutorial or use Claude Code.
# Part 1: What Is Claude Code?
Claude Code is a tool that runs on your computer. Don’t be intimidated by the word “code.” You don’t need any coding or programming skills to use it. You install Claude Code on your computer just like you would an app like Zoom or Zotero.
Once you have it on your computer, you open your project folder (dissertation, paper, etc.) and let Claude work inside the folder. Claude can read every file in the folder, edit existing files, and create new ones. It can also remember what you were working on after you end a session.
Unlike browser-based apps like ChatGPT and Gemini that only “talk,” Claude Code can actually “do” things for you.
## 1.1 Why You Should Care About It?
You are a researcher and have a folder on your computer with several PDFs, drafts of your papers, spreadsheets, datasets, and a few transcripts of interviews. All these documents are relevant to your project, but you need to make connections across published literature, gathered data, and your own notes.
This is the kind of use-case that Claud Code was built for.
Most academics and researchers have used AI apps in their browsers (ChatGPT, Claude, Gemini, etc.) You open a tab and type in a prompt and the AI replies. If you want to ask questions about your papers or drafts, you add them to ChatGPT or Claude.
Claude Code is different because instead of you bringing your files to an AI app in the browser, you bring the AI into the folder containing all your data.

## 1.2 Why Claude Code Matters for Academic Work
There are two fundamental ways in which Claude Code can work as your reliable and powerful research assistant.
First, Claude Code remembers you, your research, your writing style, and your ever-evolving research requirements. You won’t have to explain your requirements repeatedly.
Second, since Claude Code works within a folder on your computer, it can process multiple files at a time. For example, it can go through all forty-five PDFs in your folder and extract relevant information (objectives, methodology, etc.) from all of them. You can even ask it to create a new file based on extracted information.
Claude Code can handle all types of files from Word files to Excel sheets, PDFs, etc.

## 1.3 What Does It Mean in Practical Terms?
If you are a qualitative researcher, load a folder full of interview transcripts and ask Claude Code to give you every instance of a particular utterance, e.g. how each participant talked about a given subject. Then ask it to look for overarching themes across interviews.
If you are a quantitative researcher, add a messy CSV or an Excel sheet in your folder and ask Claude Code to clean it up for you. You can ask it to run descriptive statistics or ask it to explain a critical comment made by a reviewer.

## 1.4 What Claude Code is Not
Claude Code is an incredibly powerful tool, but it is not a replacement for your expert judgment. It can draft, summarize, code, but what counts as argument or evidence is your responsibility.
Academics who are likely to succeed using Claude Code are the ones who treat it as a research assistant and not those who outsource all their thinking and judgment to it.

# Part 2: Installing Claude Code App, Your First Session
If you’re new to Claude Code, set aside 15-20 minutes to install it and set it up. You don’t need any coding skills to use Claude Code.
You will need a Claude Pro or Max subscription to use Claude Code on your computer.
## 2.1 Installation
Claude Code is available for both Windows and Mac. Go to claude.com/download and download the version compatible with your computer. Run it the way you would any other installer (e.g. Zoom, Zotero, etc.). On Windows, it appears in your Start Menu. On Mac, it appears in your Applications folder.
Open the app once you have installed in it. The first time you open it, Claude will ask you to sign in through browser. Once you have signed in, you will see a column on the left and a chat panel in the middle. The left column will show you a record of all your conversations just like in Claude or ChatGPT in browser.

## 2.2 Opening Your First Folder
Click “Open Folder.” It usually on top of the chat bar in the main panel. Its position keeps changing slightly with every update, but you will mostly find it in the vicinity of the chat bar.
Navigate to any folder on your computer in which you have stored PDFs or your drafts. If you want to be extra careful, create a dedicated “Claude Research Assistant folder” and navigate to that.
Now Claude Code is inside that folder. It has access to every file and subfolder inside the main folder.

## 2.3 What a Session Looks Like
A session is the conversation you have with Claude in the main chat panel just like you do it in browser apps like ChatGPT.
The interaction is like browser-based apps like ChatGPT. The only difference is that now Claude Code has access to your files on your computer. It also has the ability to create files on your computer.
Once you are in the folder, give Claude a simple prompt like:
Read all the papers in the folder and give me their main arguments as a separate file.
That’s it. Most of your interaction with Claude Code would be writing instructions like this.
Claude Code will go ahead and retrieve relevant information from the papers and start creating a new file. This file will show up in the folder that you are working in.
As it proceeds, it will ask you for permission to do so. You can make Claude Code bypass permissions, but in the beginning, it’s a good idea to make Claude Code ask for permissions. You don’t want Claude Code to end up deleting any important files without asking you.
Every session you start in Claude Code is automatically saved in the panel on the left.

# Part 3: Claude Code as Your Research Assistant
Every time Claude Code starts, it immediately looks for a file called CLAUDE.md for a set on of instructions to follow. Notice the block letters, this is important.
There are two ways you can create a CLAUDE md file: automatic and manual.
## 3.1 Manually
If you want to do it manually, open Notepad on Windows or TextEdit on a Mac and write down the kind of instructions you want Claude Code to follow. Please note that you only need to write these instructions in plain language. You don’t need to use any coding or programming language.
You can divide CLAUDE md file into following sections:
#Role (the hash sign here indicates that it’s a heading)
Describe the kind of role you would like Claude Code to assume as your research assistant. Give it a few details about your research field and current project.
#Standards
Describe academic standards relevant to your field of research. For example, you can tell Claude Code to follow a given citation style or a specific structure of a research paper.
#Writing Style
Tell Claude Code the kind of writing style you would like it to follow, whether you want it to respond in academic style or in an informal style.
#Critique Style
Describe how you would like Claude Code to critique your work, whether you would like to focus on your argument, evidence, or methodology.
Save the file as CLAUDE.md in your main Claude folder on your computer and you are done.
You don’t need to have a perfectly crafted CLAUDE.md file. You can always go back and edit it as your project evolves.

## 3.2 Automatically
If you don’t want to create a CLAUDE.md file manually, simply start a chat session in Claude Code and give it details about its role, standard, writing style, and critique style. Then ask it to create a CLAUDE.md file using this information.
Claude Code will create the file and save it to your Claude folder.

## 3.3 Auto-Memory
As you work through your project, Claude Code will write short notes about your work and save them for its own use. You won’t see them and you don’t need to bother about them too much. Claude Code puts these notes in a folder and manages it on its own.
Each time you start a session, Claude Code reads CLAUDE.md and its own notes and uses them to answer your questions.
Over time, your instructions and Claude Code’s notes gives it enough context about you and your work that it becomes a reliable research assistant.
You can ask Claude Code about its memory by typing “Tell me what you have stored in your memory.” If a certain piece of information is outdated (e.g. a citation style), simply ask it update its memory with the new information.

## 3.4 What Not to Put in CLAUDE.md
Don’t put any confidential information in CLAUDE.md or anything that you don’t the AI to use.
Don’t let CLAUDE.md become a set of outdated information because that will have considerable impact on its output. You may want to update the file every few weeks.

# Part 4: Working with Your Research Documents
A Claude folder does not have to be very neatly organized. This doesn’t mean you start putting irrelevant files in this folder. What it means is that you should not spend any time organizing it. Claude can do that itself. The only thing you may want to keep in mind is not to give your files confusing names like Dissertation (final) (final2) (use this one).
Add a bunch of PDFs, Word files, datasets, interview transcripts, etc. related to your project.
Suppose you have twenty research papers related to your research topic and you want to find a common theme that runs across all of them. Or maybe you have a certain claim or an argument, and you are looking for papers that present evidence supporting or contrasting that claim.
Open the folder in Claude Code and write a prompt like:
Read every PDF in this folder and tell me which articles disagree with the following argument: [paste the argument here]
Claude will read all the PDFs in the folder and will give you the relevant information from these articles. Claude’s answer may be in the form of a table.
## 4.1 Research Assistant for Literature Review
If you are a biomedical researcher or a social scientist who frequently runs systematic reviews, download fifty research articles and put them in a folder titled “Systematic Review with Claude.”
Open the folder in Claude Code and give it your screening (inclusion/exclusion) criteria and ask it to screen all the papers in the folder.
Claude Code will screen the papers according to your criteria and give you the results in the form of a table.

## 4.2 Working with Transcripts
If you are qualitative researcher, you can add interview transcripts in the Claude folder and ask it extract information related to a given topic.
For example, you can ask it to extract how each respondent answer a given question.

## 4.3 Give Claude a Tedious Task
Put fifty-odd PDFs in a folder and open it in Claude Code. Then ask it to go through them all and rename them using their titles.
You will see that Claude Code has done the needful in a couple of minutes.

## 4.4 Asking Claude Code to Create Files
Since your project is going to evolve, you would want Claude Code to create certain files for you too so that can you go back to them if needed. It will also help Claude Code with easy retrieval as the project develops.
Anytime you ask Claude Code to do a significant task like screening papers or extracting information from transcripts, ask it to save your answer in folder as a file.
Generally, Claude Code will save these files as markdown (md), which take up very less space and are very easy for Claude Code to retrieve information from. But you can also ask it to create a Word file or an Excel sheet.

# Part 5: Claude Code “Skills”
A Skill is a set of instructions that makes Claude Code a specialist for one task. Just like CLAUDE.md file, a Skill is also a markdown file written in plain English. And just like CLAUDE.md, you can create a Skill file both manually and automatically.
Once you create a Skill, Claude Code will remember when to use it. You do not have to remember yourself. But you can always invoke a Skill if want to, by using the forward-slash command.
The easiest way to create a Skill is to ask Claude Code to do it for you. Let’s say, you have regular Zoom calls, and you have transcripts of those calls. For every call or transcript, you want to extract actionable items or things to do.
To create a Skill, start a Claude Code session and simply ask it to create a Skill for extracting actionable items from Zoom transcripts.
Claude Code will get to work. It will ask you follow-up questions and create a Skill file that you can edit if you want to. Maybe you want Claude Code to follow a specific structure while responding.
Once the Skill is created, restart Claude Code and the Skill will be ready to use.
## 5.1 Difference between CLAUDE.md and Skills
CLAUDE.md contains global instructions about you and your project. It gives Claude Code the big picture about you and your research.
Skills, on the other hand, are meant for particular tasks. These files contain information that are much more specific and granular. CLAUDE.md, Skill, and auto-memory work in concert to give you the best possible response.

## What Not to Delegate to Claude Code
Claude Code is great at labor intensive, time consuming, and repetitive tasks. Outsource these tasks to Claude Code. But Claud Code will not be able to create what actually counts as scholarship because it won’t be able to give you new and original arguments.
It can synthesize information that you can then use in service of your argument, but the job of coming up with an original argument remains yours as a researcher.

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---
*导出时间: 2026/5/7 22:20:50*
---
## 中文翻译
# 学术研究者的 Claude Code 入门指南
**作者**: Mushtaq Bilal, PhD
**日期**: 2026-05-07T10:43:55.000Z
**来源**: [https://x.com/MushtaqBilalPhD/status/2052338632426467550](https://x.com/MushtaqBilalPhD/status/2052338632426467550)
---

这是一份由五个部分组成的教程,旨在帮助学术研究者入门 Claude Code。
我用通俗易懂的语言撰写了这份教程,你不需要任何技术背景就能理解本教程或使用 Claude Code。
# 第一部分:什么是 Claude Code?
Claude Code 是一个运行在你电脑上的工具。不要被“code(代码)”这个词吓到。使用它不需要任何编码或编程技能。你可以像安装 Zoom 或 Zotero 这样的应用一样,把 Claude Code 安装到你的电脑上。
安装好之后,你打开自己的项目文件夹(博士论文、研究论文等),让 Claude 在这个文件夹内工作。Claude 可以读取文件夹中的每一个文件、编辑现有文件并创建新文件。它还能在会话结束后记住你之前在做的工作。
与只能“聊天”的 ChatGPT 和 Gemini 等基于浏览器的应用不同,Claude Code 可以真正为你“做”事情。
## 1.1 为什么你应该关注它?
假设你是一名研究者,电脑上有一个文件夹,里面有几份 PDF、你的论文草稿、电子表格、数据集以及几份访谈记录。这些文档都与你的项目相关,但你需要在已发表的文献、收集的数据和你自己的笔记之间建立联系。
这正是 Claude Code 所擅长解决的使用场景。
大多数学者和研究者都使用过浏览器中的 AI 应用(ChatGPT、Claude、Gemini 等)。你打开一个标签页,输入提示词,AI 就会回复。如果你想就自己的论文或草稿提问,你需要把它们上传到 ChatGPT 或 Claude 中。
Claude Code 的不同之处在于:不需要你把文件上传到浏览器中的 AI 应用,而是把 AI 直接带入包含你所有数据的文件夹中。

## 1.2 为什么 Claude Code 对学术工作很重要
Claude Code 可以作为你可靠而强大的研究助手,主要体现在两个方面。
首先,Claude Code 会记住你、你的研究、你的写作风格以及不断变化的研究需求。你不必反复解释你的要求。
其次,由于 Claude Code 在你电脑上的某个文件夹内工作,它可以一次处理多个文件。例如,它可以遍历你文件夹中的全部四十五份 PDF,并从中提取相关信息(研究目标、研究方法等)。你甚至可以让它基于提取的信息创建一个新文件。
Claude Code 可以处理各种类型的文件,包括 Word 文档、Excel 表格、PDF 等。

## 1.3 实际应用中意味着什么?
如果你是一名质性研究者,可以加载一个装满访谈记录的文件夹,让 Claude Code 找出某类特定表述的所有实例,例如每位参与者是如何谈论某个特定话题的。然后让它寻找访谈中反复出现的主题。
如果你是一名量化研究者,可以把一个杂乱的 CSV 文件或 Excel 表格放进文件夹,让 Claude Code 帮你清理数据。你可以让它运行描述性统计,或让它解释审稿人提出的一条关键意见。

## 1.4 Claude Code 不是什么
Claude Code 是一个极其强大的工具,但它不能取代你的专业判断。它可以起草、总结、编码,但什么算作论证或证据,这是你的责任。
能够成功使用 Claude Code 的学者,是那些把它当作研究助手的人,而不是那些把所有思考和判断都外包给它的人。

# 第二部分:安装 Claude Code 应用,开启你的第一次会话
如果你是 Claude Code 新手,请预留 15-20 分钟来安装和设置它。使用 Claude Code 不需要任何编程技能。
你需要在电脑上使用 Claude Code,需要有 Claude Pro 或 Max 订阅。
## 2.1 安装
Claude Code 同时支持 Windows 和 Mac。访问 claude.com/download,下载与你电脑兼容的版本。像运行其他安装程序(如 Zoom、Zotero 等)一样运行它。在 Windows 上,它会出现在你的开始菜单中。在 Mac 上,它会出现在你的应用程序文件夹中。
安装完成后打开这个应用。第一次打开时,Claude 会要求你通过浏览器登录。登录后,你会看到左侧有一栏,中间有一个聊天面板。左侧一栏会显示你所有对话的记录,就像浏览器中的 Claude 或 ChatGPT 一样。

## 2.2 打开你的第一个文件夹
点击“Open Folder(打开文件夹)”。它通常位于主面板中聊天栏的上方。它的位置会随每次更新略有变化,但你基本都能在聊天栏附近找到它。
导航到你电脑上存储了 PDF 或草稿的任意文件夹。如果你想格外谨慎,可以创建一个专门的“Claude 研究助手文件夹”,然后导航到该文件夹。
现在 Claude Code 已经进入那个文件夹了。它可以访问主文件夹中的每一个文件和子文件夹。

## 2.3 一次会话是什么样的
会话就是你在主聊天面板中与 Claude 进行的对话,就像你在 ChatGPT 等浏览器应用中做的那样。
交互方式与 ChatGPT 等基于浏览器的应用类似。唯一的区别是,现在 Claude Code 可以访问你电脑上的文件,还可以在你的电脑上创建文件。
进入文件夹后,给 Claude 一个简单的提示,例如:
阅读文件夹中的所有论文,把它们的主要论点整理成一个单独的文件。
就是这样。你与 Claude Code 的大部分交互,都会是这样编写指令。
Claude Code 会检索论文中的相关信息,并开始创建一个新文件。这个文件会出现在你当前工作的文件夹中。
在操作过程中,它会请求你的许可。你可以让 Claude Code 绕过权限,但刚开始时,最好让 Claude Code 请求权限。你不会希望 Claude Code 不经询问就删除任何重要文件。
你在 Claude Code 中开启的每个会话都会自动保存在左侧面板中。

# 第 3 部分:让 Claude Code 成为你的研究助手
每次启动 Claude Code 时,它会立即寻找一个名为 CLAUDE.md 的文件,以获取一组要遵循的指令。注意这些大写字母,这很重要。
创建 CLAUDE.md 文件有两种方式:自动和手动。
## 3.1 手动方式
如果你想手动操作,在 Windows 上打开记事本,或在 Mac 上打开 TextEdit,写下你希望 Claude Code 遵循的指令类型。请注意,你只需用平实的语言编写这些指令,不需要使用任何编码或编程语言。
你可以将 CLAUDE.md 文件分为以下几个部分:
#Role(这里的井号表示这是一个标题)
描述你希望 Claude Code 作为你的研究助手所扮演的角色。向它提供一些关于你的研究领域和当前项目的细节。
#Standards
描述与你的研究领域相关的学术规范。例如,你可以告诉 Claude Code 遵循特定的引用格式或论文的特定结构。
#Writing Style
告诉 Claude Code 你希望它遵循什么样的写作风格,是学术风格还是非正式风格。
#Critique Style
描述你希望 Claude Code 如何评价你的工作,是侧重于你的论点、证据还是研究方法。
将文件以 CLAUDE.md 的名称保存到你电脑上的主 Claude 文件夹中,就完成了。
你不需要有一个完美打造的 CLAUDE.md 文件。随着项目的推进,你随时可以回来修改它。

## 3.2 自动方式
如果你不想手动创建 CLAUDE.md 文件,只需在 Claude Code 中开启一个聊天会话,向它提供有关其角色、规范、写作风格和评价风格的详细信息,然后让它根据这些信息创建一个 CLAUDE.md 文件。
Claude Code 会创建该文件并将其保存到你的 Claude 文件夹中。

## 3.3 自动记忆
在你推进项目的过程中,Claude Code 会记录关于你工作的简短笔记,并将其保存供自己使用。你看不到这些笔记,也不必过多操心。Claude Code 会将这些笔记放入一个文件夹中并自行管理。
每次你开始一个会话时,Claude Code 会读取 CLAUDE.md 和它自己的笔记,并利用它们来回答你的问题。
随着时间的推移,你的指令和 Claude Code 的笔记会让它对你的工作有足够的了解,从而成为一个可靠的研究助手。
你可以通过输入“告诉我你的记忆里存储了什么”来询问 Claude Code 关于其记忆的信息。如果某条信息已过时(例如引用格式),只需让它用新信息更新记忆即可。

## 3.4 不应放入 CLAUDE.md 的内容
不要在 CLAUDE.md 中放入任何机密信息,或不希望 AI 使用的任何内容。
不要让 CLAUDE.md 变成一份过时的信息集合,因为这会对其输出产生相当大的影响。你可能需要每隔几周更新一次该文件。

# 第 4 部分:使用你的研究文档
Claude 文件夹不必整理得非常整洁。这并不意味着你可以往这个文件夹里随意放置不相关的文件,而是说你不需要花时间整理它,Claude 可以自己完成。你唯一需要记住的是,不要给你的文件起令人困惑的名字,比如“论文(最终版)(最终版2)(用这个)”。
添加一堆与你的项目相关的 PDF、Word 文件、数据集、访谈记录等。
假设你有二十篇与研究主题相关的研究论文,你想找出贯穿所有这些论文的共同主题。或者你有一个特定的主张或论点,正在寻找提供支持或反驳该主张的证据的论文。
在 Claude Code 中打开该文件夹,并输入类似以下的提示词:
阅读此文件夹中的每个 PDF,告诉我哪些文章不同意以下论点:[在此粘贴论点]
Claude 会阅读文件夹中的所有 PDF,并为你提供这些文章中的相关信息。Claude 的回答可能以表格形式呈现。
## 4.1 文献综述研究助手
如果你是一名经常进行系统综述的生物医学研究者或社会科学家,可以下载五十篇研究文章,并将它们放入一个名为“与 Claude 进行系统综述”的文件夹中。
在 Claude Code 中打开该文件夹,向它提供你的筛选(纳入/排除)标准,并让它筛选文件夹中的所有论文。
Claude Code 会根据你的标准筛选论文,并以表格形式给出结果。

## 4.2 处理访谈记录
如果你是一名定性研究者,可以将访谈记录添加到 Claude 文件夹中,并让它提取与特定主题相关的信息。
例如,你可以让它提取每位受访者对某个问题的回答。

## 4.3 给 Claude 一项繁琐的任务
将五十来个 PDF 放入一个文件夹,并在 Claude Code 中打开它。然后让它浏览所有文件,并根据标题重命名它们。
你会看到 Claude Code 在几分钟内就完成了这项工作。

## 4.4 让 Claude Code 创建文件
由于你的项目会不断演进,你可能还希望 Claude Code 为你创建一些文件,以便在需要时可以回头查看。这也有助于 Claude Code 在项目发展中轻松检索信息。
每当你让 Claude Code 执行一项重要任务(如筛选论文或从转录稿中提取信息)时,请让它把结果作为文件保存在文件夹中。
通常,Claude Code 会将这些文件保存为 markdown(md)格式,这种格式占用空间很小,而且 Claude Code 从中检索信息也非常容易。但你也可以要求它创建 Word 文件或 Excel 表格。

# 第 5 部分:Claude Code 的“技能”(Skills)
技能(Skill)是一套指令,能让 Claude Code 成为某项任务的专家。与 CLAUDE.md 文件一样,技能也是一个用普通英语编写的 markdown 文件。而且和 CLAUDE.md 一样,你既可以手动创建技能文件,也可以自动创建。
一旦创建了技能,Claude Code 会记住何时使用它。你自己不必记住。但你也可以随时通过正斜杠命令手动调用某个技能。
创建技能最简单的方法是让 Claude Code 为你完成。比如说,你经常进行 Zoom 通话,并且有这些通话的转录稿。对于每一次通话或转录稿,你都想提取出可执行的待办事项。
要创建技能,请启动一个 Claude Code 会话,直接让它创建一个用于从 Zoom 转录稿中提取可执行事项的技能。
Claude Code 就会开始工作。它会向你提出后续问题,并创建一个技能文件,你可以根据需要对其进行编辑。比如,你可能希望 Claude Code 在回答时遵循特定的结构。
技能创建完成后,重启 Claude Code,技能即可使用。
## 5.1 CLAUDE.md 与技能的区别
CLAUDE.md 包含关于你和你的项目的全局指令。它让 Claude Code 了解你和你的研究的整体情况。
而技能则是针对特定任务的。这些文件包含的信息更加具体和细化。CLAUDE.md、技能和自动记忆协同工作,为你提供尽可能好的回答。

## 不应委托给 Claude Code 的事情
Claude Code 擅长处理劳动密集型、耗时和重复性的任务。把这些任务外包给 Claude Code 吧。但 Claude Code 无法创造出真正算得上学术成果的东西,因为它无法为你提供新颖的原创论点。
它可以综合信息供你在论证中使用,但提出原创论点的工作仍然是作为研究者的你自己的责任。

## 相关链接
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*导出时间: 2026/5/7 22:20:50*